Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015826717.1_cds_XP_016502779.1_16383
CDS Infomation

[gene=LOC107820931] [db_xref=GeneID:107820931] [protein=serine hydroxymethyltransferase 4] [protein_id=XP_016502779.1] [location=join(41406..42083,44753..45143,45241..45342,45703..45947)] [gbkey=CDS]
Sequence

ATGGATCCAGTTTCAATCTGGGGCAATACACCCTTATCAGAAACCGACCCGGAAATCCAC
GACCTTATAGAAAAAGAAAAACGCCGTCAATGTCGCGGCATAGAACTAATCGCATCGGAA
AACTTCACGTCGTTCGCCGTAATCGAAGCACTCGGCAGCGCGTTAACTAATAAATACTCC
GAAGGAATGCCAGGTAACCGTTACTACGGCGGCAATGAATACATAGACGAAATCGAAAAC
CTAACACGTTCCCGCGCTTTACAAGCTTTTCACGTGGACCCCACAAAATGGGGTGTTAAT
GTTCAACCATATTCAGGTAGTCCAGCTAACTTTGCTGCATATACAGCAGTTTTAAATCCA
CATGATAGAATTATGGGATTGGATTTACCATCAGGTGGGCATTTAACACATGGGTATTAT
ACATCTGGAGGGAAAAAGATATCAGCTACTTCAATTTATTTTGAGAGTTTACCTTATAAG
TTGGATTCAAAAACTGGGTATATTGATTATGATAGATTGGAAGAGAAAGCATTGGATTTT
AGGCCTAAGTTGATTATTTGTGGAGGGAGTGCTTATCCCAGAGATTGGGATTATAAAAGA
TTTAGAGATGTTGCTGATAAATGTGGGGCTCTTTTGCTTTGTGATATGGCTCATATTAGT
GGCCTTGTTGCTGCTCAGGAAGCAGCAAATCCATTTGAATACTGTGACTTGGTCACTACT
ACTACCCACAAAAGCTTGAGGGGTCCAAGGGCGGGTATGATCTTCTATCGCAAGGGTCCC
AAGCCACCAAAGAAGGGCCAGCCTGAAGATGCAGTTTACGATTTCGAAGACAAGATTAAT
TTTGCTGTTTTCCCTTCACTCCAGGGCGGTCCTCACAACCACCAGATTGGTGCTTTAGCT
GTGGCTTTGAAACAGGCCATGACTCCTGGATTTAAGGCTTATGCTAAGCAAGTGAAGGCA
AATGCTGTTGCTCTTGGCAACTACCTGATGAGTAAAGGATACAACCTTGTCACTAGCGGG
ACTGAAAACCACCTTGTTCTTTGGGATCTTCGTCCTCTTGGTTTGACTGGTAACAAGGTT
GAGAAACTTTGTGACCTTGCCAACATTACTGTTAACAAGAATGCTGTATTTGGTGATAGC
AGTGCTTTGGCCCCTGGAGGTGTTCGTATTGGTACTCCCGCCATGACATCGAGGGGTTTG
CTTGAGAAGGACTTTGAGCAGATCGGCGAGTTCCTTCATAGGGCAGTGACAATCACCTTG
AACATCCAGAAGGAACATGGAAAGCTTTTGAAGGACTTTAACAAAGGTCTGGTTAACAAC
AAAGAAATTGAAGAACTCAAAGCAGATGTTGAGAAATTTGCTTCCTCTTTTGACATGCCT
GGCTTCAAGATGTCTGAGATGAAGTACAAAGACTAA

Peptide Sequence

PEP ID

XP_016502779.1
PEP Infomation

PREDICTED: serine hydroxymethyltransferase 4 [Nicotiana tabacum]
Sequence

MDPVSIWGNTPLSETDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS
EGMPGNRYYGGNEYIDEIENLTRSRALQAFHVDPTKWGVNVQPYSGSPANFAAYTAVLNP
HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKLDSKTGYIDYDRLEEKALDF
RPKLIICGGSAYPRDWDYKRFRDVADKCGALLLCDMAHISGLVAAQEAANPFEYCDLVTT
TTHKSLRGPRAGMIFYRKGPKPPKKGQPEDAVYDFEDKINFAVFPSLQGGPHNHQIGALA
VALKQAMTPGFKAYAKQVKANAVALGNYLMSKGYNLVTSGTENHLVLWDLRPLGLTGNKV
EKLCDLANITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTITL
NIQKEHGKLLKDFNKGLVNNKEIEELKADVEKFASSFDMPGFKMSEMKYKD

Transcript Sequence

Gene sequence data has not been registered.